The Art and Science of Statistical Bioinformatics

To obtain a copy of the Workshop Programme and Abstracts booklet either download the whole proceedings booklet, or download individual files for selected papers.

We hope that you find these papers useful. If you do, then please give full acknowledgment using the bibliographic information as indicated below.

Entire proceedings booklet

Full LASR2008 booklet (c2MB).


INDIVIDUAL PDF FILES

Mardia, K.V. (2008). Holistic statistics and contemporary life sciences. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.9-17. Leeds, Leeds University Press.

Neuwald, A.F. (2008). The CHAIN program: forging evolutionary links to underlying mechanisms. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.18-18. Leeds, Leeds University Press.

Charalambous, C., Delrieu, D, & Bowman, C.E. (2008). Whole genome scan algebra and smoothing. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.21-27. Leeds, Leeds University Press.

Heisterkamp, S. (2008). Analysis of proteomics samples from mass spectrography of a longitudinal experiment using Functional Data Analysis (FDA). In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.28-31. Leeds, Leeds University Press.

Schmidler, S.C. (2008). Statistical prediction and molecular simulation. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.32-32. Leeds, Leeds University Press.

Katina, S. (2008). Detection of shape outliers, with an application to complete unilateral cleft lip and palate in humans. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.33-37. Leeds, Leeds University Press.

Levitt, M. (2008). Mesoscale modeling of macromolecular machines. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.41-41. Leeds, Leeds University Press.

Yang, Z. & Burgess, R. (2008). Bayesian estimation of hominoid ancestral population sizes. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.45-45. Leeds, Leeds University Press.

Frellsen, J., Moltke, I., Thiim, M., Mardia, K.V., & Hamelryck, T. (2008). A probabalistic approach to modelling RNA 3-D structure. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.46-46 Leeds, Leeds University Press.

Westhead, D.R., Whitaker, J.W., & McConkey, G.A. (2008). The metabolic networks of the chromealveolates: capability and evolution. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.47-47 Leeds, Leeds University Press.

Kinnings, S., Davies, J.R., Mardia, K.V., Taylor, C.C. & Jackson, R.M. (2008). A new probabilistic model for binding site similarity analysis: applications in understanding ligand cross-reactivity and the functional classification of the protein kinase family. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.48-49. Leeds, Leeds University Press.

Lio, P., Angelini, C., De Feis, I., Nguyen, V.-A., Cutillo, L., & van der Wath, R. (2008). Statistical issues for combining replicates and nearby species data and different omics. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.50-54. Leeds, Leeds University Press.

Trouve, A. (2008). Shape analysis via currents transport: Current tools and statistical challenges. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.57-57. Leeds, Leeds University Press.

Bookstein, F.L. (2008). Templates: A complex new parameter for morphometric analyses takes the form of an algorithmic flow. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.58-63. Leeds, Leeds University Press.

Evison, M. (2008). Analysis of face shape variation in 3000 faces using pair wise distances between landmarks. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.64-64. Leeds, Leeds University Press.

Palaniswamy, S., Thacker, N.A., Klingenberg, C.P. (2008). Automatic identification system for morphometric landmarks. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.65-69. Leeds, Leeds University Press.

Kent, J.T., Mardia, K.V., Taylor, C.C. (2008). Modelling strategies for bivariate circular data. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.70-74. Leeds, Leeds University Press.

Aykroyd, R.G., Barber, S., & Peck, S.J. (2008). Imputation on 2-dimensional data via lifting. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.77-80. Leeds, Leeds University Press.

Bugaighis, I., O'Higgins, P., Tiddeman, B, Mattick, C.R., Hodgkinson, P., Ali, W., & Hobson, R. (2008). Three-dimensional geometric morphometrics applied to the study of children with cleft lip and palate from the North East of England. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.81-82. Leeds, Leeds University Press.

Chaudhry, Q., Mardia, K.V., Petty, E.M., & Taylor, C.C. (2008). Toxicity prediction. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.83-84. Leeds, Leeds University Press.

Czogiel, I., Dryden, I.L., & Brignell, C.J. (2008). Bayesian alignment of continuous molecular shapes using random fields. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.85-88. Leeds, Leeds University Press.

Dalton, J. & Jackson, R.M. (2008). Homology modelling of protein-ligand interactions. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.89-89. Leeds, Leeds University Press.

Davies, J.R, Jackson, R.M., Mardia, K.V., & Taylor, C.C (2008). Performance of Poisson Index in identifying of protein kinase off-target liabilities. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.90-91. Leeds, Leeds University Press.

Fuller, J.C., Burgoyne, N.J., & Jackson, R.M. (2008). Drug discovery at the protein-protein interface: statistics from the binding site. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.92-92. Leeds, Leeds University Press.

Hommola, K., Smith, J.E., Qiu, Y, & Gilks, W.R. (2008). A permutation test to explore the relationship of host and parasite phylogenies. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.93-93. Leeds, Leeds University Press.

Kinnings, S., & Jackson, R.M. (2008). Using binding site similarity analysis for the functional classification of the protein kinase family. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.94-94. Leeds, Leeds University Press.

Polsen, O. & Taylor, C.C. (2008). The choice of smoothing parameter in kernel regression smoothing. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.95-95. Leeds, Leeds University Press.

Savriama, Y. & Klingenberg, C.P. (2008). Characterising the structure of the shape tangent space for objects with complex symmetry. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.96-99. Leeds, Leeds University Press.
An updated version of this paper was received after the workshop proceedings went to press.

Shuweihdi, F. & Taylor, C.C. (2008). Classification of shapes with non-isotropic errors. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.100-100. Leeds, Leeds University Press.

Stones, R., Sinclair, C., Boxall, A., & Pietravalle, S. (2008). Identifying metabolite fate potential. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.101-101. Leeds, Leeds University Press.

Tedder, P. & Westhead, D.R. (2008). PAGODA: A multi-source protein function prediction program for Plasmodium falciparum. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.102-102. Leeds, Leeds University Press.

Vernon, I., Goldstein, M. & Wilkinson, D.J. (2008). A comparison of Bayesian inference techniques applied to systems biology models. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.103-103. Leeds, Leeds University Press.

Voliotis, M., Cohen, N., Molina-Paris, C., Liverpool, T.B. (2008). Backtracking and error correction in DNA transcription. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.104-107. Leeds, Leeds University Press.

Webb, E. & Westhead, D.R. (2008). Co-expression & protein interactions in important cellular complexes. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.108-108. Leeds, Leeds University Press.

Whitaker, J.W., McConkey, G.A., & Westhead, D.R. (2008). metaTIGER: a metabolic evolution resource and its application to the chromalveolate evolution. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.109-109. Leeds, Leeds University Press.

Williamson, L., Westhead, D.R., & Wood, I.C. (2008). Does the sequence of your potassium channel genes predispose you to disease?. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.110-110. Leeds, Leeds University Press.

Zhou, D., Dryden, I.L., Koloydenko, A., & Bai, L. (2008). Bayesian multi-tensor diffusion MRI and tractography. In S. Barber, P.D. Baxter, A. Gusnanto & K.V. Mardia (eds), The Art and Science of Statistical Bioinformatics, pp.111-115. Leeds, Leeds University Press.


Page maintained by Stuart Barber. Please send any comment or questions to workshop @ maths.leeds.ac.uk
Back to the LASR 2008 home page or the Leeds Annual Statistical Research Workshop homepage
Last modified: Wed Aug 6 12:28:15 BST 2008