CNALR is an R package to perform a stratification of tumour subtypes based on copy number alteration profiles using next-generation sequence data. This webpage is currently set to support the submission of the manuscript Stratifying tumour subtypes based on copy number alteration profiles using next-generation sequence data. The R package has currently been tested only in Linux/Unix environment. Download the R package here (version 1.0, 27 March 2014).
The input data for the CNALR package are basically the output of CNAnorm across different sequences/patients. After you normalise the CNA (per patient) using the CNAnorm package, save the results, preferably with .norm file extension.
R CMD INSTALL CNALR_[version].tar.gz
You can also install CNALR in your own directory by using
R CMD INSTALL -l your-own-directory CNALR_[version].tar.gz
if you have installed the package in your own directory (not in the default location).
Last modified: Sat Apr 5 00:17:05 GMT 2014