Quantitative Biology, Shape Analysis, and Wavelets

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Extra pages

Cover; Inside cover; Title page; Preface; Contents page; Timetable; Abstract section divider Session dividers; List of Participants; Author Index.

Papers

Mardia, K.V. (2005). A vision of statistical bioinformatics In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 9-20. Leeds, Leeds University Press.

Delrieu, O. & Bowman, C. (2005). Visualisation of gene and pathway determinants of disease In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 21-24. Leeds, Leeds University Press.

Johnson, V.E. (2005). Bayes factors based on test statistics, applied to false discovery rates In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 25. Leeds, Leeds University Press.

Green, P.J. & Mardia, K.V. (2005). Matching and alignment in protein bioinformatics, using Bayesian hierarchical models In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 29. Leeds, Leeds University Press.

Browne, W.J. (2005). An illustration of the use of reparameterisation methods for improving MCMC efficiency in crossed random effect models In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 31-34. Leeds, Leeds University Press.

Horgan, G., Roberts, A, & Green, N. (2005). Landmark and other methods for assessing plant part shape In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 35-38. Leeds, Leeds University Press.

An updated version of the paper by Horgan, Roberts, & Green is also available.

Funkhouser, T., Glaser, F., Laskowski, R., Morris, R., Najmanovich, R., Stockwell, G., & Thornton, J. (2005). Shape-based classification of bound ligands In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 39-42. Leeds, Leeds University Press.

Dryden, I.L., Mian, S., Browne, W.J., Handley, K., di Nisio, R., & Rees, R. (2005). Statistical analysis of SELDI protein chip data from breast cancer cell lines exposed to chemotheraputic agents In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 43-46. Leeds, Leeds University Press.

Kingman, J. (2005). Mathematics, biology and the Newton Institute In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 49. Leeds, Leeds University Press.

Liverpool, T.B. (2005). Fluctuations and hydrodynamics in active filament solutions In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 51-53. Leeds, Leeds University Press.

Findlay, J.B.C. (2005). Predicting fold from sequence: A new algorithm In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 55. Leeds, Leeds University Press.

Kent, J.T. & Hamelryck, T. (2005). Using the Fisher-Bingham distribution in stochastic models for protein structure In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 57-60. Leeds, Leeds University Press.

Brown, P., Morris, J., Coombes, K., & Baggerly, K. (2005). Bayesian functional models with wavelets for disease identification in Mass Spectroscopy Proteomics In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 63-64. Leeds, Leeds University Press.

Baxter, P.D. (2005). Simulating non-stationary Gaussian processes using the wavelet transform In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 65-68. Leeds, Leeds University Press.

Panaretos, V.-M. (2005). Fourier inference for reconstruction problems in biophysics In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 69. Leeds, Leeds University Press.

Paige, R., Patrangenaru, V., Ruymgaart, F., & Wang, W. (2005). Analysis of projective shapes of curves using projective frames In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 71-74. Leeds, Leeds University Press.

Kolamunnage, R.R. & Kent, J.T. (2005). Decomposing departures from bilateral symmetry In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 75-78. Leeds, Leeds University Press.

Hogg, D., Cohn, A.G., Devin, V., Magee, D., Needham, C., & Santos, P. (2005). Learning about objects and activities In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 79-82. Leeds, Leeds University Press.

Jones, D.T., Ward, L.J., & Sodhi, J.S. (2005). Binding site recognition and disorder prediction in protein function annotation In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 85-86. Leeds, Leeds University Press.

Needham, C., Bradford, J., Bulpitt, A., & Westhead, D.R. (2005). Application of Bayesian networks to two classification problems in bioinformatics In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 87-90. Leeds, Leeds University Press.

Morris, R.J., Kahraman, A., Funkhouser, T., Najmanovich, R., Stockwell, G., Glaser, F., Laskowski, R., & Thornton, J.M. (2005). Binding pocket shape analysis for protein function prediction In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 91-94. Leeds, Leeds University Press.

Gold, N. & Jackson, R.M. (2005). Fold independent structural comparisons of ligand binding sites in protein structures for function prediction In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 95. Leeds, Leeds University Press.

Gilks, W.R., Tom, B.D.M., & Brazma, A. (2005). Fusing microarray datasets using multivariate regressions, with application to the cell-cycle in yeast In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 97-100. Leeds, Leeds University Press.

Neuwald, A.F. (2005). A Bayesian approach to systems biology: Measuring evolutionary constraints as protein properties reflecting underlying mechanisms In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 101-102. Leeds, Leeds University Press.

Posters

Bradford, J., Needham, C., Bulpitt, A., & Westhead, D.R. (2005). Protein function prediction and classification using uncertainty In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 105-106. Leeds, Leeds University Press.

Brignell, C.J., Browne, W.J., & Dryden, I.L. (2005). Covariance weighted Procrustes analysis In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 107-110. Leeds, Leeds University Press.

Bugrien, J.B. & Kent, J.T. (2005). Independent component analysis: An approach to clustering In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 111-114. Leeds, Leeds University Press.

Doncescu, A. (2005). Wavelet transform for Voronoi organized meshes In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 115-118. Leeds, Leeds University Press.

Evans, K. (2005). Curve-fitting in shape space In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 119-122. Leeds, Leeds University Press.

Farcomeni, A., Lasinio, G.J., Alisi, C., & Chiarini, L. (2005). A new multiple testing procedure with applications to quantitative biology and wavelet thresholding In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 123-126. Leeds, Leeds University Press.

Flood, B. (2005). Procrustes mean shape estimation In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 127. Leeds, Leeds University Press.

Gamblin, R. & Jackson, R.M. (2005). A knowledge based model for protein-DNA interactions: A structural approach. In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 128. Leeds, Leeds University Press.

Gardiner, E.J., Willett, P., & Artymiuk, P.J. (2005). Use of wavelets to compress three-dimensional protein maps In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 129-131. Leeds, Leeds University Press.

Garrow, A. & Westhead, D.R. (2005). Screening genomes for transmembrane barrel proteins In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 132. Leeds, Leeds University Press.

Golalizadeh, M., Dryden, I.L., & Ball, F. (2005). Brownian motion and Ohrnstein-Uhlenbeck processes in planar shape space In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 133. Leeds, Leeds University Press.

Goodwin, A., Barber, S., & Aykroyd, R.G. (2005). Modelling and predicting flow regimes using wavelet representations of ERT data In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 134-137. Leeds, Leeds University Press.

Handley, K., Browne, W.J., & Dryden, I.L. (2005). Bayesian analysis of SELDI-TOF data In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 138-141. Leeds, Leeds University Press.

Hawes, R. (2005). A probabilistic approach to the asymptotics of integer partitions In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 142-145. Leeds, Leeds University Press.

Hughes, G., Mardia, K.V., & Taylor, C.C. (2005). Circular time series with application to protein conformations In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 146-149. Leeds, Leeds University Press.

Laurie, A.T.R. & Jackson, R.M. (2005). Q-SiteFinder: An online tool for ligand-protein binding site prediction In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 150-151. Leeds, Leeds University Press.

Mardikian, S., Westhead, D.R., & Jackson, R.M. (2005). The application of multi-objective genetic algorithms to protein-ligand docking In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 152. Leeds, Leeds University Press.

Morecroft, L., Evison, M., & Fieller, N. (2005). 3D shape analysis for facial identification In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 153-154. Leeds, Leeds University Press.

Nyirongo, V., Mardia, K.V., & Westhead, D.R. (2005). EM algorithm, Bayesian and distance approaches to matching functional sites In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 155-156. Leeds, Leeds University Press.

O'Brien, T.E. (2005). Developing an undergraduate biostatistics program: Challenges and successes In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 157. Leeds, Leeds University Press.

Oledzki, P.R. & Jackson, R.M. (2005). Developing a protein-ligand docking algorithm: Flexligdock In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 158. Leeds, Leeds University Press.

Quinn, L., Mardia, K.V., Mobbs, S.D., & Vosper, S.B. (2005). Statistical analysis for high resolution data assimilation In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 159-162. Leeds, Leeds University Press.

Mardia, K.V., Patrangenaru, V., & Sugathadasa, S. (2005). Protein gels matching In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 163-165. Leeds, Leeds University Press.

Walder, A.N., Xu, C., Dowd, P.A., Mardia, K.V., Fowell, R.J., & Kent, J.T. (2005). MCMC implementation of rock fracture modelling In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 166-167. Leeds, Leeds University Press.

Walls, R.E., Barber, S., Gilthorpe, M.S., & Kent, J.T. (2005). Analysis of microarray data In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. 168-171. Leeds, Leeds University Press.

Xu, C., Dowd, P.A., Mardia, K.V., Fowell, R.J., & Taylor, C.C. (2005). Inference for marked point processes In S. Barber, P.D. Baxter, K.V.Mardia, & R.E. Walls (Eds.), Quantitative Biology, Shape Analysis, and Wavelets, pp. . Leeds, Leeds University Press.


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Last modified: Mon Nov 28 09:50:39 GMT 2005